ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR399
source: miRBase, original name: mtr-MIR399b (MI0001743)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGCTGCCCTG miRNA* GGGCATGTCTCTATTGGTAGG mismatches: 3 bulges: 0 |
pre-miRNA
TCATAGGGCATGTCTCTATTGGTAGGTGATATGGTGATATTTCATTTGAATTAGAGGCTTCAGAAATTCACTTGCCAAAGGAGAGCTGCCCTGTGAGTGT
TTAGCTTAAACA
dot-bracket secondary structure
((((((((((..(((((.(((((((((((.....(((..((((..........))))..))).....))))))))))).)))))..))))))))))..((
(((...))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TCATAGGGCATGTCTCTATTGGTAGGTGATATGGTGATATTTCATTTGAATTAGAGGCTTCAGAAATTCACTTGCCAAAGGAGAGCTGCCCTGTGAGTGT
TTAGCTTAAACA
dot-bracket secondary structure
((((((((((..(((((.(((((((((((.....(((..((((..........))))..))).....))))))))))).)))))..))))))))))..((
(((...))))).
SIMILARITIES| miRBase mtr-MIR399d: 1e-37 PMRD mtr-miR399b: 4e-59 microPC miR399: 0.00008 | UniProt no hits RFAM mir-399: 0.0000004 |
Identical with: mtr-miR399b from PMRD (MNEST048751) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
