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Species belonging to selected taxon:
Medicago sativa
,
Trifolium pratense
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040732
species:
Medicago truncatula
miRNA family:
MIR399
source:
miRBase, original name:
mtr-MIR399b
(
MI0001743
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAGCTGCCCTG
miRNA*
GGGCATGTCTCTATTGGTAGG
mismatches:
3
bulges:
0
View larger
pre-miRNA
TCATA
GGGCATGTCTCTATTGGTAGG
TGATATGGTGATATTTCATTTGAATTAGAGGCTTCAGAAATTCACT
TGCCAAAGGAGAGCTGCCCTG
TGAGTGT
TTAGCTTAAACA
dot-bracket secondary structure
(((((
(((((..(((((.((((((((
(((.....(((..((((..........))))..))).....)))))
)))))).)))))..)))))))
)))..((
(((...))))).
SIMILARITIES
miRBase
mtr-MIR399d
:
1e-37
PMRD
mtr-miR399b
:
4e-59
microPC
miR399
:
0.00008
UniProt
no hits
RFAM
mir-399: 0.0000004
Identical with:
mtr-miR399b
from PMRD (
MNEST048751
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"