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Species belonging to selected taxon:
Medicago sativa
,
Trifolium pratense
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040740
species:
Medicago truncatula
miRNA family:
MIR399
source:
miRBase, original name:
mtr-MIR399j
(
MI0005591
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGCCAAAGAAGATTTGCCCCG
miRNA*
GGGCAATGACTTCTTTGGCAGT
mismatches:
5
bulges:
1
View larger
pre-miRNA
TTACT
GGGCAATGACTTCTTTGGCAGT
AGTTGACTTGATCATTCAGATGATGCAAACAAACTCAC
CGCCAAAGAAGATTTGCCCCG
CAATT
dot-bracket secondary structure
.....
((((((...((((((((((.((
((((...((((((((....))))).)))...)))).))
.))))))))))..))))))..
.....
SIMILARITIES
miRBase
ptc-MIR399e
:
0.00000002
PMRD
mtr-miR399i
:
7e-42
microPC
no hits
UniProt
no hits
RFAM
mir-399: 2e-45
Identical with:
mtr-miR399i
from PMRD (
MNEST048757
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Bonnet E,
Unpublished (2007).
,