miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040746
species: Medicago truncatula
miRNA family: MIR399
source: miRBase, original name: mtr-MIR399p (MI0005634)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGAGTTGCCCTG

miRNA*
 GGGCACCTCTCTCCTGGCAAG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 AACAATAGGGCACCTCTCTCCTGGCAAGTAAAAAGGGCTCAGTGCCAATAACTTGCCAAAGGAGAGTTGCCCTGTGGCT

dot-bracket secondary structure
....((((((((.((((((..((((((((......(((.....)))....))))))))..)))))).))))))))....


SIMILARITIES
miRBase mtr-MIR399l: 1e-39

PMRD vvi-miR399b: 0.00000006

microPC miR399: 0.0000009		UniProt no hits

RFAM mir-399: 0.000000001

Identical with: mtr-MIR399l from miRBase (MNEST040742)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Bonnet E, Unpublished (2007).,



Liczniki na strone;