ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR1509
source: miRBase, original name: mtr-MIR1509 (MI0010543)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAATCTAGGAAAATACGGTG miRNA* CCGGATTTCCTTGATTAAAG mismatches: 3 bulges: 1 |
pre-miRNA
CCCGGCCTCTCTCTTGCCTCATAGCTAGTTAGGGTTTTCGTTGCTGTCTCGTGTTTTCTTTTGATCCATTCAATTTTTTTAATCTAGGAAAATACGGTGG
AGAGGGTTTTTCTTTTTATTGTTTGAGATTGATATCTCTCGTCTTCTCTACCGGATTTCCTTGATTAAAGAAATTTACTGGTTCATTATTATTTTTTAGC
TATGATGACAATGTGTATCCCAGCTCATTATGAGGCCTTTTTGTAAGGTCTGGG
dot-bracket secondary structure
((((((((..(....(((((((((..((((.((((...(((((..(((..((.........(((.(((.(.(((((((((((((.((((((...((((((
((((((.....(........)...(((((....)))))...))))))))))))..)))))).))))))))))))).).))).))).............))
...)))..)))))...)))).))))..)))))))))......)..))).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Northern, Solexa
references
[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
CCCGGCCTCTCTCTTGCCTCATAGCTAGTTAGGGTTTTCGTTGCTGTCTCGTGTTTTCTTTTGATCCATTCAATTTTTTTAATCTAGGAAAATACGGTGG
AGAGGGTTTTTCTTTTTATTGTTTGAGATTGATATCTCTCGTCTTCTCTACCGGATTTCCTTGATTAAAGAAATTTACTGGTTCATTATTATTTTTTAGC
TATGATGACAATGTGTATCCCAGCTCATTATGAGGCCTTTTTGTAAGGTCTGGG
dot-bracket secondary structure
((((((((..(....(((((((((..((((.((((...(((((..(((..((.........(((.(((.(.(((((((((((((.((((((...((((((
((((((.....(........)...(((((....)))))...))))))))))))..)))))).))))))))))))).).))).))).............))
...)))..)))))...)))).))))..)))))))))......)..))).)))))
SIMILARITIES| miRBase mtr-MIR1509b: 0.0002 PMRD mtr-miR1509: 6e-131 microPC no hits | UniProt no hits RFAM snoR69Y: 2e-26 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Northern, Solexa
references
[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
