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Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040751
species: Medicago truncatula
miRNA family: MIR1510
source: miRBase, original name: mtr-MIR1510a (MI0010542)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGGAGGATTAGGTAAAACAAC

miRNA*
TGTCTTACCCATTCCTCCCAT

mismatches: 5
bulges: 0

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pre-miRNA
AAAGTTGCTATTGCAATTGTTGTCTTACCCATTCCTCCCATCCCATAAATCTATTATATGTACTCCATCATCATATGGATCCACTCTTGTCTTATGATAA
TAGAGTCGCATGATAGGAATCTTGGATCGGAGGATTAGGTAAAACAACTATTGCATTAGGCTTT


dot-bracket secondary structure
(((((..(((.((((((.(((((.(((((...((((((.((((......((((((((.((.((((.((.((((((.((((........)))))))))).)
).)))))).))))))))......)))).))))))...))))).))))).)))))).))))))))



SIMILARITIES
miRBase mtr-MIR1510b: 0.0000001

PMRD mtr-miR1510a: 6e-90

microPC no hits
UniProt no hits

RFAM no hits

Identical with: mtr-miR1510a from PMRD (MNEST048766)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa, 454

references

[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
[2] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"




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