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Species belonging to selected taxon:
Medicago sativa
,
Trifolium pratense
,
Medicago truncatula
ABOUT THIS RECORD
ID:
MNEST040751
species:
Medicago truncatula
miRNA family:
MIR1510
source:
miRBase, original name:
mtr-MIR1510a
(
MI0010542
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CGGAGGATTAGGTAAAACAAC
miRNA*
TGTCTTACCCATTCCTCCCAT
mismatches:
5
bulges:
0
View larger
pre-miRNA
AAAGTTGCTATTGCAATTGT
TGTCTTACCCATTCCTCCCAT
CCCATAAATCTATTATATGTACTCCATCATCATATGGATCCACTCTTGTCTTATGATAA
TAGAGTCGCATGATAGGAATCTTGGAT
CGGAGGATTAGGTAAAACAAC
TATTGCATTAGGCTTT
dot-bracket secondary structure
(((((..(((.((((((.((
(((.(((((...((((((.((
((......((((((((.((.((((.((.((((((.((((........)))))))))).)
).)))))).))))))))......))))
.))))))...))))).)))))
.)))))).))))))))
SIMILARITIES
miRBase
mtr-MIR1510b
:
0.0000001
PMRD
mtr-miR1510a
:
6e-90
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
mtr-miR1510a
from PMRD (
MNEST048766
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
Northern, Solexa, 454
references
[
1
] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T,
BMC Genomics. 9:593(2008).
,
"High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"
[
2
] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M,
Plant Cell. 21:2780-2796(2009).
,
"Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"