ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR2088
source: miRBase, original name: mtr-MIR2088b (MI0012051)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAATGTAATCTAGGTCTAC miRNA* AGGCCTAGATTACATTGGACA mismatches: 0 bulges: 0 |
pre-miRNA
GTAGACGGCGGCTTAACCGATGTAGGCCTAGATTACATTGGACAAAACAGTCCAAACTTGAGATGGTTACTTCTTGGTCCAATGTAATCTAGGTCTACAT
CTGTTAAGTCTCTAA
dot-bracket secondary structure
......((.((((((((.(((((((((((((((((((((((((.....(((...((((......))))))).....))))))))))))))))))))))))
).)))))))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
GTAGACGGCGGCTTAACCGATGTAGGCCTAGATTACATTGGACAAAACAGTCCAAACTTGAGATGGTTACTTCTTGGTCCAATGTAATCTAGGTCTACAT
CTGTTAAGTCTCTAA
dot-bracket secondary structure
......((.((((((((.(((((((((((((((((((((((((.....(((...((((......))))))).....))))))))))))))))))))))))
).)))))))).))..
SIMILARITIES| miRBase mtr-MIR2088a: 7e-61 PMRD mtr-miR2088: 7e-61 microPC no hits | UniProt sp|O04197|COI1_ARATH: 0.00006 RFAM no hits |
Identical with: mtr-MIR2088a from miRBase (MNEST040755) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
