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Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST040939
species: Medicago truncatula
miRNA family: MIR2652
source: miRBase, original name: mtr-MIR2652f (MI0011976)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATGCAGGGTGCATAAGGATT

miRNA*
TTCAATTGCACCCTGCTGGA

mismatches: 5
bulges: 1

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pre-miRNA
TGTTTTCAATTGCACCCTGCTGGATCAAAGAAAACCATTAAGTACATCTAATGATTTTGGAGTACAACTCACAGAAACCATTTCCACTGCAAAATGGTTT
TAGAGTCCAACTCACAAAAACTATTTTCACTGCAAAATAGTTTTGGCATAATGGGCTGGGATTTATGCAGGGTGCATAAGGATTCC


dot-bracket secondary structure
.(..(((...((((((((((((((((..((....((((((.((((.(((((.....))))))))).((((...((((((((((........)))))))))
).))))..........(((((((((((......)))))))))))....)))))).))..)))))).))))))))))...)))..).



SIMILARITIES
miRBase mtr-MIR2652a: 3e-21

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"




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