miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST008344
species: Medicago truncatula
miRNA family: MIR2610
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGATTGAGACTTGTATGGCTT

miRNA*
ATCATGTAGGGCTTTGTCTTT

mismatches: 3
bulges: 0

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pre-miRNA
CTGCCGAAGAAAGTGTAGGTAAGATTGAGACTTGTATGGCTTCGTTGAAAGACGCCTAGAGGGTAATTCAGGAAGGCAAAACCGAAGGCTGAGGTCAGCT
AGTGGAGTAACATAGAACAAACGCAAAGAGGGAATTGGTTTTCCTAACAGCAAGCCTAGGATGTTCGACCCTACCAAAGGCTCATTCCACAGTGCCGGAT
TCATCCATGATTCGCCAGAGACCAATGGAATTACAGACGATGCACCTGAAGGTGTGGCACCTATCTTTGTGACACCTGGAGGAGCCTGCTGCAACTAGAT
TGTGGTAGACATTCCTTCTGCGATACCCCGTTCTAATTAATATGTTGGTCTTGTCTTTTGTCTTTTTTGCTTTTAAGAAAACTCCTTTCGTCCTGCCCAA
GACGAAAGTGAAATCATGTAGGGCTTTGTCTTTGCTTCCAATACTTTTATT


dot-bracket secondary structure
........((((((((.((.(((((.(((.(((((((((.((((((....)))..((.((((((((....(((((((((.(((((.(((((....)))))
.(((...(((..((((((...((((..((((((((.((((.(((((..........))))).....))))(((((..((((((.((((.((((((((...
...(((((..(((....)))....)))))........))..))).))).((((((.(((........))).))))))))))))))))...((((.....)
))))))))..)))))))))))).......)))))).))).))).))))).))))))))).......)))))))).)).......((((((((........
)))))))).))).))))))))).))).))))).....)).))))))))...



SIMILARITIES
miRBase mtr-MIR2610a: 5e-108

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
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