ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR2587
source: miRNEST
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACCGTTCATAGGAACCCT miRNA* GGTTCATATAACGGTCAACA mismatches: 1 bulges: 1 |
pre-miRNA
CTTCCATTTTCTTCNAATGTTTTTTTGTTTTTTAGGGGTGTCGATGGTGTCATGGTCATTGTTGACCGTTCATAGGAACCCTGCAATTGCAATGCATTGT
AGCTTGTGTGGGGTTCATATAACGGTCAACAGAGACCCTTGACATAAAAAAAGACACAAAAAATTAAATAACATCTGGTCCAGATTTCT
dot-bracket secondary structure
.........(((((..(((((.(((.(((((((....(((((....((((((.((((.((((((((((((.(((.((((((((((...((.((.....))
.))...)))))))))).))))))))))))))).))))..)))))).......)))))))))))).))).)))))..))...))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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CTTCCATTTTCTTCNAATGTTTTTTTGTTTTTTAGGGGTGTCGATGGTGTCATGGTCATTGTTGACCGTTCATAGGAACCCTGCAATTGCAATGCATTGT
AGCTTGTGTGGGGTTCATATAACGGTCAACAGAGACCCTTGACATAAAAAAAGACACAAAAAATTAAATAACATCTGGTCCAGATTTCT
dot-bracket secondary structure
.........(((((..(((((.(((.(((((((....(((((....((((((.((((.((((((((((((.(((.((((((((((...((.((.....))
.))...)))))))))).))))))))))))))).))))..)))))).......)))))))))))).))).)))))..))...))).....
SIMILARITIES| miRBase mtr-MIR2587c: 2e-44 PMRD no hits microPC no hits | UniProt no hits RFAM MIR2587: 3e-40 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
