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Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST008378
species: Medicago truncatula
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGGGAATGTTGTCTGGCTCGAGG

mismatches: 3
bulges: 2

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pre-miRNA
TATTGGGAAGCTTTATTTTGGGAGGGGAATGTTGTCTGGCTCGAGGACGCTTTCTTCTCGATCTAATGCAAATTTGTGGTCATGGATTGTAAAGTATTCT
CGGACCAGGCTTCATTCCCC
CCAATTATATGCTTCCATGG


dot-bracket secondary structure
.....((((((..(((.(((((..(((((((..((((((.(((((((.(((((.....(((((((.((((....))))....))))))).))))).))))
))).))))))..))))))))
))))..))).))))))....



SIMILARITIES
miRBase mtr-MIR166g: 3e-54

PMRD mtr-miR166d: 1e-47

microPC miR166: 5e-50
UniProt no hits

RFAM mir-166: 6e-53
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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