miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST008396
species: Medicago truncatula
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATACTCCCTCCGTCTCAAATT

miRNA*
 TTTGAGACGGAGGAGTATTA

mismatches: 0
bulges: 1
View larger
pre-miRNA
 CCAACTAAGAAATACTCCCTCCGTCTCAAATTATAAACAAAAAAATATTTTCACACTTATTAAGAAACTAAAATATTGTAGTTTGTAGTATGACTTCTTG
TGTTATCTTTGGAATAAGTTTCATAGAAAGATATAAAATCAATTTTCATTGGTTATTAGTTATAGAGAAAATTGAAAGAGAAAACATAGTAAATGCAAAT
TGCATTTAATTTCTCTTTGGAAAAGATGATTTTTTGAAAAAATATAATTAAATATAATAAAAGTTAGTCTTTTTTACTTATAATTTACGACAAAGAAAAT
GAATTTAATTCCTTATAATTTGAGACGGAGGAGTATTATTAATCTT

dot-bracket secondary structure
..........((((((((.(((((((((((((((((......((.((..((((((..(((((..((((((........)))))).)))))))..(((((.
((((.(((.(((((....))))).)))(((.(((((..(((((((((.(((...........))).)))))))))((((((((......((((((((...
)))))))).))))))))((((((((((...((((((.....((((......))))..))))))...)))))))))).))))).)))..)))))))))..)
)))..)).))..))))))))))))))))))))))))).........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
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