miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST008401
species: Medicago truncatula
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACTCCCTCCGTCCCGAAATA

miRNA*
TNTTGGGAAGGAAAGGGGTAAT

mismatches: 4
bulges: 1

View larger
pre-miRNA
GAGAGTGNGTGTTTAGGTNTTGGGAAGGAAAGGGGTAATCGAGTAATTCCAGATAAAGAAAAAAAAAGTGGAGGGCATCATTGTCCAGTGATAAGGCTGA
CAAAATAGATCAAAATGTATACAATATTTGTATTGTCTAAATGTGTACTTTTGAAAAAAATTGTAAGCTCAATCGAGTCTAAAAATATACTTTTAAAGGT
TTTCTTAGAAATGTGAACACAAATTATTATTGGAATATTTTCAGTCAAGTCTCATAAAACATCTATATGTACTCCCTCCGTCCCGAAATATAAGCAAAAA
AAAC


dot-bracket secondary structure
.........((((((.((.((((((.(((..((((((..((.(((..((((.................))))(((((....))))).((.((.(((((((
(((((((..((((((((((.((((((....)))))).))..(((((((((((((((...(((.((.((((....)))).))..)))....))))))))))
..((.((....)).)))))))...)))).))))..))))))..))).))))).))...))...))).)))))))).))).)))))).)).))))))....
....



SIMILARITIES
miRBase osa-MIR1862a: 0.00006

PMRD osa-miRf10322-akr: 0.0000003

microPC miR1439: 0.0002
UniProt no hits

RFAM MIR1122: 0.000005
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record





Liczniki na strone;