miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST008402
species: Medicago truncatula
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATATATAGGGACGGAGGGAG

miRNA*
CCCTCCGTCCCTAATTATAAG

mismatches: 4
bulges: 0

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pre-miRNA
TACGGCCGGGCCCTCCGTCCCTAATTATAAGACCCTTTTGAGAATTTTTTTTGTCCCTTTTTATAAGACCCCTTTGTTATTTCCAACTACATTAATTATT
TCTTTACATACATGCCCCTATTTATTATACATCTTTTTCTTCAATCAACAATAAATATCATGTTGAAAAAATAAACTAACCTTCTTTCTTAAAGGATAAA
ATTGTTAAAACAATAGTGATTACAAACAACTTTAATACAAATATTCACTATCTTAATTCCCGCGATTTCGGCAAAAGGGTCTTATATATAGGGACGGAGG
GAG
TACATGC


dot-bracket secondary structure
....((....(((((((((((((..(((((((((((((((.(((.((.((((((((...((((.((((.......(((..................((((
(.((((...(((((....((((((((.......................)))))))).))))))))).))))))))......))))...)))))))))))
)..(((((....(((((((.((...................)).))))))).)))))......)).)))..)))))))))))))))..))))))))))))
).)
)......



SIMILARITIES
miRBase no hits

PMRD osa-miRf11808-akr: 0.00006

microPC no hits
UniProt no hits

RFAM MIR1122: 0.00002
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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