ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR2119
source: miRNEST
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAAAGGGAGGTGTGGAGTAG miRNA* ACTCCCTACTTTCCTTTGATT mismatches: 2 bulges: 0 |
pre-miRNA
AGCAATGATGTTACTCCTATACTTTATTTTTTTTACACTAAGATACTCCCTACTTTCCTTTGATTGGAAATAAAGAGAGACAAAAAGGTAAATTTAATTT
CTCTTCTTATGTCAATCAAAGGGAGGTGTGGAGTAGAGGTGTAAAAAGTAAAGTATAAGAATAATGTCATTGTAAAG
dot-bracket secondary structure
.((((((((((((.((.((((((((((..((((((((((....((((((.(((((((((((((((((..((((.((((((...................)
))))).)))).))))))))))))))))).))))))..)))))))))))))))))))).)).))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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AGCAATGATGTTACTCCTATACTTTATTTTTTTTACACTAAGATACTCCCTACTTTCCTTTGATTGGAAATAAAGAGAGACAAAAAGGTAAATTTAATTT
CTCTTCTTATGTCAATCAAAGGGAGGTGTGGAGTAGAGGTGTAAAAAGTAAAGTATAAGAATAATGTCATTGTAAAG
dot-bracket secondary structure
.((((((((((((.((.((((((((((..((((((((((....((((((.(((((((((((((((((..((((.((((((...................)
))))).)))).))))))))))))))))).))))))..)))))))))))))))))))).)).))))))))))))....
SIMILARITIES| miRBase mtr-MIR2119: 1e-57 PMRD mtr-miR2119: 1e-57 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
