miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST008426
species: Medicago truncatula
miRNA family: MIR1525
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAGTTAATTAAGTTTTTAGT

miRNA*
TAAAAGCTTATGGACTCGTA

mismatches: 5
bulges: 1

View larger
pre-miRNA
ATAAAACATAATATTTAATTTTATTGAATAAAGAGTTAATTAAGTTTTTAGTCCCTATAAATATTCACAGTTTTGTTTTTAGTCCCTACAAAATAAAATC
ACACTTTTTAGTCCCTGTGACATTTTCCTTAAGCATTTTAGGGACCAAAAATGTTGATGAAAATTTTTAACAGGGATTAAAAATACTGACGAAAATTTTT
GACAGGGATTAAAAATACAACGTTTTTTTAATTGTGAAGTAAACCAAAACAACTGCAAGTGAATATTTAAGTAGTGTGATCGCAAGGTCTATGTTTCTGA
CACGCACGCACGCGCGCACTTGTACATATAAAAGCTTATGGACTCGTAAACTCATCATAGACTCGAGGGGGGGCCC


dot-bracket secondary structure
...........((((((((...))))))))..(((((...((((((((((.......(((((((((((.(((.((((((((((((((.(((((.....((
(...((((((((((((((((((((((((((((.....)))))))....)))))))(((....)))....))))))))))))))...))).......))))
)..)))))))))))))).)))....((.((.((((.............)))).)).))))))))))))).(((((((((((....))))..((((...))
))(((......))).)))))...))...))))))))))..))))).....(((.((........))..))).....



SIMILARITIES
miRBase gma-MIR1525: 6e-61

PMRD gma-miR1525: 6e-61

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record





Liczniki na strone;