miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Medicago sativa, Trifolium pratense, Medicago truncatula



ABOUT THIS RECORD

ID: MNEST008430
species: Medicago truncatula
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCATCATCATCATCATCATGG

miRNA*
CTGATGGAGAGGATGATGAAA

mismatches: 5
bulges: 0

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pre-miRNA
AAACAATTTAATCATCATCATCATCATCATGGAGAAAGATAAACAAAGTAAGCTAAGGAACAAGTTCATGAAAGCAATCACAATAACATTTCAAAACGCT
CCTTTCAGTCCAGGAAGAGATCACAAATTTAGATCAGAAAATAGTAATACAAAGTGGGGTGCAAAAACTCATGCTGTTGGTAAGGGTTTTTCTGGACCTA
TGGTTACTATGATTCCATATGAAGCTAGAAGAAAACCTAAAGATGGTGGTGGCAATGAAACTCAAGAACCCACTTCACCAAAGATTTCTTGTATGGGACA
GATCAAGCATCACAAGAAGAAAAATATTCCAAAACCCAACAAAGATCTCTTCACTCCAAAGGTGGATACTGAGGTAAAGAGATCCAAGTTTCAGAGGATT
TTTTCGCAGAGGTCTAAAGCAAAATTTGCGGAAAGGAAATCAGATGGTTCTGGATTTGTTGATGAAGGGAACAACAAAGCACCGCCTATGGGTGATATGA
GGAGATTTGCAAGTGGACGTGAGGCTTTTTCTAAATTTGATTGGAAGGCAGTGATTGAGCCTGAAGAAATTGGATCAAAGGGAATGTTTTACTGATGGAG
AGGATGATGAAA
TTTTGATT


dot-bracket secondary structure
...........((((((((.((.((((((....((((..............(((...(((....))).....))).............))))((((((.(
(((((..((((((..((.((((((...(((.(((((((..((((((((.....(((((.((.((((((((.((((...)))).)))))))).))..))))
).))))))))..((((((((........((((((.........(((((((((...(((...))).....)))))..))))....)))))))))))))).(
((..((((.((((..(((........)))......(((....(((((((((((.((((.((((((.(((....))).....(((((.(..(((...((((
((((((((((.((.....))....))))))))...))))))...)))..))))))((((((..........))))))....)))))).)))).....)))
)))))))).....)))..)))).))))..)))...)))))))..)))...))))))....)).......))))))..)))))).))))))..)))))).)
).))))))))..
........



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q9SGS5|Y1607_ARATH: 0.0000000001

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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