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Species belonging to selected taxon:

Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST001119
species: Hordeum vulgare
miRNA family: MIR157
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGACAGAAGAGAGTGAGCAC

miRNA*
GCTCACCCTCTCTCTGTCT

mismatches: 3
bulges: 1

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pre-miRNA
TGGCTGACAGAAGAGAGTGAGCACACAGCGGCAGGCTACGTCTGATAAGAGCATGGTTAATAGTATAGCCAACTGCTGGCTATAAGCATCTTTATAGCTC
ATCTTATAGCTGGCTTGTACAATAGTTAGCTGTAAAAGAGTACTACTTTTATCATATATGGCCTACCTTTCATTCTCACAAAGCACCTATGAGCACGTGC
TAGAGCCGGCTCTTCACGAAGAGCCCGCTTCCCTTCTCTCTCCTCTTCTCTCTCATCCAACTCAGCAAANATATAGTATTTTAATCCTTACAGCCTGCTG
ACTGTACCTTATTGTACTTGCTCTAAAGAGGACGGATGGATGCGAAGAGAGAGAGAGATAGACGCAGCTGCTGTTGCGTGCTCACCCTCTCTCTGTCT


dot-bracket secondary structure
.....((((((((((.((((((((((((((((((((((.((.(((((.((((((((.......((((((((.....)))))))).......)))).))))
...((((((((((((........)))))))))))).(((((...)))))))))).)).))))))..((((...........(((((..........))))
)))))..(((((((....))))))).((.((...((((((((((((((.....((((((..((((((.......((.((....)).)).......)))))
)((((.((((.(((.........))).)))))))).)))))).)))))).))))))))..)).)).))))))))...)))))))).)))).)))))).



SIMILARITIES
miRBase hvu-MIR156: 2e-39

PMRD hvv-miR156a: 6e-166

microPC miR156: 0.000001
UniProt no hits

RFAM mir-156: 0.0000004
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
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