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Species belonging to selected taxon:

Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST001256
species: Hordeum vulgare subsp. spontaneum
miRNA family: MIR1122
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare subsp. spontaneum Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACTCCCTCCGTCCAAAAATA

miRNA*
TTTTGGGATGAAGGGAGTAGT

mismatches: 2
bulges: 0

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pre-miRNA
CGACTAGCAAATACTCCCTCCGTCCAAAAATAACTGTATCAAGCTTAAAACAATTTTATACTAAAGCTAGCACAAAGTTGACACACTTATTTTGGGATGA
AGGGAGTAGT
ACTCTCTC


dot-bracket secondary structure
...........((((((((.(((((.(((((((.(((.((((((((.................)))))..........))).))).))))))).))))).
))))))))..
........



SIMILARITIES
miRBase no hits

PMRD osa-miRf10422-akr: 0.0004

microPC miR1439: 4e-19
UniProt no hits

RFAM MIR1122: 2e-18
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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