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Species belonging to selected taxon:
Tropaeolum majus
ABOUT THIS RECORD
ID:
MNEST002813
species:
Tropaeolum majus
miRNA family:
MIRf37
source:
miRNEST
Taxonomy by NCBI:
Tropaeolum majus
Tropaeolum
Tropaeolaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTGCGGTTCGGTTCGGTTCGG
miRNA*
GGATTTAAAGAAACGAATAT
mismatches:
5
bulges:
1
View larger
pre-miRNA
ATCGGTTTAAT
GGATTTAAAGAAACGAATAT
GTATGT
GTGCGGTTCGGTTCGGTTCGG
TATCGATC
dot-bracket secondary structure
((((((....(
(((((.((.(((.((.((((
....))
)).)).)))..)).)))))).
.)))))).
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf12527-akr
:
0.0007
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record