miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Vitis shuttleworthii, Vitis vinifera



ABOUT THIS RECORD

ID: MNEST008304
species: Vitis vinifera
miRNA family: MIRf1281
source: miRNEST

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTGTTTGGTTGCTGAGAAAA

miRNA*
 TTCTCGCCGGCCGAGCATGAA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 GATCGATTTACTCTGTTTGGTTGCTGAGAAAACTGTGGAACGGGAAAGAAAATTCTTCAACCTCGTTTTGTAATGCAGTTATTGCCATATTTGGAGCTCT
GTTAGATTTTATTGATTCCTTTCATTTTCTTTCTCACCAACAAGACGTGAACAGCTTGCTCTTGAGATCTGGTAAATTAGATTTAAAAATTGGATTTTTT
TTTCTTTGCTTTTTTGTTGTTTGTTTGCTGTGAAAAGCGTGGAAAAAAATGGATAAAGATCTGGCCTTTTTTACCGGGGTTTTGAAGGTTTAGAATAAGG
GGTTTTCTCATTTTGCATGGTGCTGTTTGTTTGCTGAGAAAACTGCGGAATTAAAAGGGAAATCTTACCTTGTACCTGATCATGTTATTTTTTGTTTCCT
TTCCGGACATTCTTTTCGTTTCATCCCTTTTTCTCGCCGGCCGAGCATGAAGGGGTTTC

dot-bracket secondary structure
(((.((.....)).)))..((((.(((((((...((((((.((((.((.(((.(((..(((...((((((....(((.....)))......))))))...
)))))).))).))..))))))))))....))))))).))))..(((((((.(((((.(((.(((((.(((((((((.(((((((.....(((....((((
(((((.((((((((.((.........))...)))))))).)))))))))....))))))))))......)))))))))..))))).)))..)).((((((
((((((((((....(((....((.....)).)))))))))))))..(((.((.......)).)))..))))))..))).))))))).......((.(((.
....))).))............((((((((..((((.....))))...))))))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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