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Species belonging to selected taxon:
Vitis shuttleworthii
,
Vitis vinifera
ABOUT THIS RECORD
ID:
MNEST008296
species:
Vitis vinifera
miRNA family:
MIRf137
source:
miRNEST
Taxonomy by NCBI:
Vitis vinifera
Vitis
Vitaceae
Vitales
rosids incertae sedis
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGGAATCTTGATGATGCTGC
miRNA*
AGCATCATCAAGATTCACAAG
mismatches:
2
bulges:
0
View larger
pre-miRNA
GGGGG
AGCATCATCAAGATTCACAAG
TATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTATGTGGTCCCTTCCTACACTCCGATGGCTCTTTGATA
TG
GGAATCTTGATGATGCTGC
CGTGGCAAT
dot-bracket secondary structure
..((.
((((((((((((((((.((.(
(...((((.(((...((.((((..((.((.((((.....)))))).))...)))).)).))).))))..)).
))
.)))))))))))))))).)
)........
SIMILARITIES
miRBase
vvi-MIR172c
:
3e-57
PMRD
vvi-miR172c
:
3e-57
microPC
miR172
:
0.0001
UniProt
no hits
RFAM
mir-172: 5e-56
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record