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Species belonging to selected taxon:

Vitis shuttleworthii, Vitis vinifera



ABOUT THIS RECORD

ID: MNEST008296
species: Vitis vinifera
miRNA family: MIRf137
source: miRNEST

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGGAATCTTGATGATGCTGC

miRNA*
AGCATCATCAAGATTCACAAG

mismatches: 2
bulges: 0

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pre-miRNA
GGGGGAGCATCATCAAGATTCACAAGTATTGAGACTCAGTGCGTGGTGGTGATGGTGACTTATGTGGTCCCTTCCTACACTCCGATGGCTCTTTGATATG
GGAATCTTGATGATGCTGC
CGTGGCAAT


dot-bracket secondary structure
..((.((((((((((((((((.((.((...((((.(((...((.((((..((.((.((((.....)))))).))...)))).)).))).))))..)).))
.)))))))))))))))).)
)........



SIMILARITIES
miRBase vvi-MIR172c: 3e-57

PMRD vvi-miR172c: 3e-57

microPC miR172: 0.0001
UniProt no hits

RFAM mir-172: 5e-56
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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