miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000710
species: Gerbera hybrid cultivar
miRNA family: MIRf647
source: miRNEST

Taxonomy by NCBI:
Gerbera hybrid cultivar Gerbera Mutisieae Mutisioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTCAAGGTGACGTGGATGACA

miRNA*
 TTATTTATATTATCTTGACTT

mismatches: 3
bulges: 0
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pre-miRNA
 CGGCACCACCATGAATATCCTTTATGGTGAACGCGTGTGCGGTCAAGGTGACGTGGATGACATGAACACAATTGTCACTCATTATTTATATTATCTTGAC
TTGATGGGTGTGGGCCGTGAGGAAGCTGGGCCCCACGAGG

dot-bracket secondary structure
......(((((((((.....)))))))))..(((....)))((((((((((.((((((((..((((((....)))...))))))))))).))))))))))
.......(((.(((((((......))..))))))))....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q9MA41|CTL1_ARATH: 0.000000000000007

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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