miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus

ABOUT THIS RECORD

ID: MNEST044914
species: Helianthus tuberosus
miRNA family: MIR171
source: microPC, original name: miR171

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGATTGAGCCGTGCCAATATC

miRNA*
TGTTGGTTCGGTTCAATAAGA

mismatches: 2
bulges: 0

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pre-miRNA
GATGTTGGTTCGGTTCAATAAGAACTCAACGTTCAAATGGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATATC

dot-bracket secondary structure
(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).)))))))))

UniProt no hits

RFAM MIR171_1: 0.00000007

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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