miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST045615
species: Helianthus tuberosus
miRNA family: MIR403
source: microPC, original name: miR403

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTAGATTCACGCACAAACTCG

miRNA*
TGTTTGTGCGTGAATCTAAGG

mismatches: 1
bulges: 0

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pre-miRNA
CGTGTTTGTGCGTGAATCTAAGGATCCTTAATCTTATCACATCACCAGTAAGTAATCATACTTTTTCTTTGTCTGTTTGTTGCCAGACAGGATCTGTTGG
TTCGTTAGATTCACGCACAAACTCG


dot-bracket secondary structure
((.((((((((((((((((((.((.((...................((.(((((....)))))...))...((((((((....)))))))).......))
.)).)))))))))))))))))).))



SIMILARITIES
miRBase vvi-MIR403e: 0.000006

PMRD vvi-miR403e: 0.000006

microPC miR403: 8e-67
UniProt no hits

RFAM MIR403: 0.0001

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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