miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST045888
species: Helianthus tuberosus
source: microPC, original name: miR159

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGATTGAAGGGAGCTCTA

miRNA*
GAGCTCCTTAAAGTCCAATA

mismatches: 2
bulges: 0

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pre-miRNA
TAGAGCTCCTTAAAGTCCAATAGAAGATCTGAGTGAGAACATAGAGCTGCTAGTTTATGGATCCCTCAAGTCCTATCTTTGTTGATGTATAGGCTTTGTG
GCTTGCATACACTTGGAGCTTTATTACCCTCCTTATGATCCTTTTTTGGATTGAAGGGAGCTCTA


dot-bracket secondary structure
(((((((((((..(((((((.(((.((((((((.(((...((((((((.(.(((.((((.(..((.((((.((((((.........).))))).)))).)
)..).)))).))).).))))))))....))))))).)))).))).)))))))..)))))))))))



SIMILARITIES
miRBase sly-MIR159: 0.0000001

PMRD sly-miR159: 0.0000001

microPC miR159: 2e-90
UniProt no hits

RFAM MIR159: 0.000002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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