miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000902
species: Helianthus tuberosus
miRNA family: MIR403
source: miRNEST

Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTAGATTCACGCACAAACTCG

miRNA*
 TGTTTGTGCGTGAATCTAACG

mismatches: 1
bulges: 0
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pre-miRNA
 CCTTCCGAACAGCCATATTTCGTGTTTGTGCGTGAATCTAACGATCCTTAATCTTATCACATCACCAGTAATCATACTTTTTGTTTGTCTGTTTGTTGCC
AGACAGGATCTGTTGGTTCGTTAGATTCACGCACAAACTCGTAATATGTCTCTTCATTTG

dot-bracket secondary structure
......(((.((.((((((.((.(((((((((((((((((((((.((.(((((((.((.((.((.(((....((.((.....)).)).)))..)).))..
.)).))))).))..)).))))))))))))))))))))).)).)))))).)).))).....


SIMILARITIES
miRBase tcc-MIR403a: 0.0000000001

PMRD stu-miR403: 0.000000008

microPC miR403: 9e-52		UniProt no hits

RFAM MIR403: 0.0000006		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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