miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002701
species: Taraxacum officinale
miRNA family: MIR1122
source: miRNEST

Taxonomy by NCBI:
Taraxacum officinale Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACTCCCTCCGTCCCAAATTA

miRNA*
 ATTTGGGACGGAGGTAGTATG

mismatches: 1
bulges: 0
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pre-miRNA
 AGAGATCTACTATGACTTATGAGGAATAGCTGCTTATTAATTACTCCCTCCGTCCCAAATTAATAGTCCACTTTTGACTTTTCAAAGTCTTATTCTTTCA
ACTTTGACCACATATAATATTGTTTATACTATACTCCGTATAATTTTTGATACAAAATATATAAATAGATTATGTTTTACATGTAAATTTTTATTGGTAT
AAGTTTCATTAAAAATTATATAACACAAAAAAAATTATTTATGGTCAAAGTTGAATAAACAAGACTTCAAAAAGTCCAAACTGAACTATTAATTTGGGAC
GGAGGTAGTATGATTTATCGGTTATTGAATCAAAGTTGTAGCCTTTATAT

dot-bracket secondary structure
.........(((((((((.(((..((((((((...((((..((((.(((((((((((((((((((((.((.(((.(((((((..(((((((.((..((((
((((((((((...(((((.((.(((............((((((((((((((..((..(((((.((((((.(((((...)))))......)))))).))))
)..))..)))))))))))))).....))).)).)))))...))))))))))))))..)).)))))))..))))))).))).)).))))))))))))))))
))))).))))))))....))))))))...)))))))))))).........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM MIR1122: 0.0003		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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