miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST046906
species: Avena sativa
source: PMRD, original name: asa-miR1122

Taxonomy by NCBI:
Avena sativa Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACTCCCTCCGTCACAAAAAGGAT

miRNA*
CCTTTTCGGGACGGAGGGAGTACA

mismatches: 2
bulges: 0

View larger
pre-miRNA
AATGCTAGTACGAAATTTTGAACTACTCCCTCCGTCACAAAAAGGATGTCTCAAGTTTGTTTGAATTTGGACGAATCTATATATTAAATAGTGTCTAGAT
ACATCCAAGTTTAGACAAATTTGATACATCCTTTTCGGGACGGAGGGAGTACATGTTTGGACAGGTTGTGGTGAAACCG


dot-bracket secondary structure
.....((.(((((...((..((((((((((((((((.(.((((((((((.(((((((((((((((((((((.(.(((((.(((((....))))).)))))
.).))))))))))))))))))))).)))))))))).).)))))))))))))...)))..))....))))).))......



SIMILARITIES
miRBase osa-MIR1862a: 0.0006

PMRD bsy-miR1122: 0.000000000002

microPC no hits
UniProt no hits

RFAM MIR1122: 6e-72

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record





Liczniki na strone;