miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001050
species: Hordeum vulgare
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTGGGACAGAGGAAGTACT

miRNA*
ATACTCCCTCCGTCCCAAAATA

mismatches: 2
bulges: 1

View larger
pre-miRNA
ATACTCTTAGATACTCCCTCCGTCCCAAAATAAGTGTCTTAATTTATACTAGCTTTAATACAAATTTGTATTAAGCTTGAGACAGTTATTTTGGGACAGA
GGAAGTACT
AAATTAC


dot-bracket secondary structure
......((((.((((.((((.((((((((((((.(((((((.........(((((.((((((....)))))))))))))))))).)))))))))))).))
)).))))))
)).....



SIMILARITIES
miRBase osa-MIR1862e: 0.000001

PMRD hpr-miR1120: 0.00000009

microPC miR1439: 0.00000000000003
UniProt no hits

RFAM MIR1122: 8e-27
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record





Liczniki na strone;