miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001261
species: Hordeum vulgare subsp. spontaneum
miRNA family: MIR1436
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare subsp. spontaneum Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTATTTTGGGACGGAGGGAGT

miRNA*
TCCCTCCGTCTTAAAATAATT

mismatches: 0
bulges: 0

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pre-miRNA
ATTAGNATGGTCATGTACATATTACATGGTACTCCCTCCGTCTTAAAATAATTGTCTCAACTTTGTACTAGCTTTAGTATAAAATTGTACTAAGGTTAAG
ACACTTATTTTGGGACGGAGGGAGTACATATAAGGCTCAACCAGNATTAATTTA


dot-bracket secondary structure
...........((((((.....))))))(((((((((((((((((((((((.(((((...........(((((((((((((....)))))))))))))))
))).)))))))))))))))))))))))......((.....))............



SIMILARITIES
miRBase osa-MIR1862c: 0.000008

PMRD hpr-miR1120: 0.00000003

microPC miR1439: 1e-35
UniProt no hits

RFAM MIR1122: 3e-30
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
Source sequences
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