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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001246
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCTCCGTCCCACAATAAGTAC

miRNA*
ATTTATTTTGGGACGGATGGT

mismatches: 4
bulges: 0

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pre-miRNA
TTTGAAGTCAATGATTCCCTTTTGTATACTACCTCCGTCCCACAATAAGTACAATCATGAGTTTTCGCGCCCAACTTTAATCGCCCGTCTTATTTAAAAT
TTTTTATAATTAGCATTTTTGTTGTTATAAGATGATAAAACATGAATAGTACTTTACTCGTGACTTATATCTTTAGTTTTTTTAAAAAAAAATTTAAATA
AAACGAATGGTCAAAGTTGGGCGCGGAAAACCATGACTGCATTTATTTTGGGACGGATGGTGTAGGAAAGAGGATGCGAGAATATGGTT


dot-bracket secondary structure
...........((..((((((((.(((((((..(((((((((.(((((((.((.(((((..(((((((((((((((((.((((..(((.(((((((((.(
(((((.(((..(((..((((((((((....))))))))))(((((.(((....))).)))))...((......)))))...))).)))))).))))))))
).)))..)))).)))))))))))))))))..))))).)).))))))).)))))))))))))))).))))).)))..))...........



SIMILARITIES
miRBase osa-MIR812k: 1e-39

PMRD osa-miR812g: 8e-26

microPC miR812: 0.0000000000003
UniProt no hits

RFAM MIR812: 4e-74
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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