miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST000239
species:
Oryza sativa
miRNA family:
MIR2123
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TAAAAAGTTAACGGTGTCAAA
miRNA*
TAACGCTGTTAACTTTTTTTA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TCATAATACGGGAATTGAATACTCCATCCGTTTCTAAATATT
TAACGCTGTTAACTTTTTTTA
AATATGTTTGACAGTTCATCTTATTAAAAAAATTTAA
GTAATTATTAATTCTTTTCATATCATTTGATTCATTGAAAAAATACTTAAATGTATACATATAGTTTTACATATTTCACCAAAGTTTTTGAATAAGACGA
ATGTCAAACATGTGGC
TAAAAAGTTAACGGTGTCAAA
TATTTAGAAACAGAGGGAGTATATAGCTCTCTTGCATAA
dot-bracket secondary structure
.........((((.(((.(((((((.((.(((((((((((((
(.((((((((((((((((...
.((((((((((((.(((.(((((((..((((((((((
(((.((.........(((((.(((....)))....))))))).)))))))(((((.((.....))..))))).(((....))))))))).))))))).))
)))))))))))))...
.)))))))))))))))).)))
))))))))))).)).))))))).))).))))........
SIMILARITIES
miRBase
osa-MIR806h
:
9e-44
PMRD
osa-miR806h
:
9e-44
microPC
miR806
:
3e-22
UniProt
no hits
RFAM
MIR806: 3e-53
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record