miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000941
species: Oryza sativa
miRNA family: MIRf75
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCCGAGACGAATCTTTTGACC

miRNA*
TATTAGGATTAGTTTTGTGTAA

mismatches: 4
bulges: 1

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pre-miRNA
TCCAAATTGCCGAGACGAATCTTTTGACCCTAATTACNCCATGATTTTACCATATGATGCTACAGTAAACACTTTGCTAATAACAGATTAATTAGGCTTA
ATAAATTTATCTCGTAGTTTCCTGGCAGAATCTGTAATTTGTTTTATTATTGGACTACGTTTAATTCCTTCAAATGTGTGTTCATATACTTCNAAATTTT
TACACCTAAACAACTAAACNCGGCCATAATAGTTATATAACTAATATAAATCTTTTTTTTCGGAAGCTTAAAGTAACTATAGGAATCGAAGTAAAAAAAG
CTTGAGATGGAAATGACCNAACAAACCACATGCACCAGAAAAAAGGAAAAATAGAAGGGTATTAGGATTAGTTTTGTGTAAATGGA


dot-bracket secondary structure
((((..((((((((((.((((((...(((((((((((.....((((((.(((...((.(((((((((((...))))))......((((.((((.......
...)))).)))).))))).)).))).)))))).))))))(((((((((((.((.((..(((((.((.........(((((....................
)))))......)).)))))..)))))))))).((((((.....)))))).(((((((((((..((((((......(((...........))).....)))
)))..))(((..(((.............)))...))).))))))))).)))))..)))))...)))))).)))))).)))).))))



SIMILARITIES
miRBase osa-MIR2124a: 5e-37

PMRD osa-miR442: 7e-27

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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