miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001803
species: Panicum virgatum
miRNA family: MIRf1372
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCGAGCTTCTCGAAGATGTCG

miRNA*
GCGTGCTTGGCGAGCTCGCCG

mismatches: 3
bulges: 0

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pre-miRNA
AGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGCACCGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGCGCGAGCTT
GGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGG


dot-bracket secondary structure
.((((((((..((((.(((((((((((.((((..(((((.(((((...((...(((((....)))))))))))).))))).(((((....((....)).)
)))).)))).))))))))))).))))..))))))))........



SIMILARITIES
miRBase no hits

PMRD osa-miRf10132-akr: 2e-64

microPC no hits
UniProt sp|Q6ZBP3|H2B2_ORYSJ: 3e-19

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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