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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002843
species: Zingiber officinale
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Zingiber officinale Zingiber Zingiberaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCAATTGTTGCCTCAAGCTC

miRNA*
 GTATAAGGCAGCAATTGCATA

mismatches: 5
bulges: 0
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pre-miRNA
 GAGATTTCAGTTAATGCAAAAGAAGGCAGCACGTATAAGGCAGCAATTGCATAACTTGTTATGTGCGCTGCCTTAGTTTCTTGCAATTGTTGCCTCAAGC
TCGTTGCCTCCCTTTGCTAAAACTGTGAGTA

dot-bracket secondary structure
....((.(((((...(((((...(((((((..((...((((((((((((((.((((.((..........))...))))...))))))))))))))...))
..)))))))...)))))...))))).))...


SIMILARITIES
miRBase tae-MIR444: 0.0004

PMRD zma-miR444a: 0.0004

microPC miR444: 2e-33		UniProt no hits

RFAM MIR444: 0.00003		most similar mature miRNAs

Identical with: miR444 from microPC (MNEST045275)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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