miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST040648
species: Medicago truncatula
miRNA family: MIR156
source: miRBase, original name: mtr-MIR156 (MI0001752)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCACA

miRNA*
AGCTCTTTCTTCTTCTCTCATT

mismatches: 4
bulges: 1

View larger
pre-miRNA
AGCCATGAATCAGTCCGAGATGACAGAAGAGAGAGAGCACACCCACCTGATTACAAGTAACAAAAAACTACCAACTATCAACATTTTGTCTACTATGAAG
AAAATCACATGTCTAGACTATAGTTACGAATGGAAGATACATTCAATGATGTTTATGAAAATTTGAGACGGTCGAGGACTATAGTTACTCTATCGCATAC
ATTTAATGACAAAAAAAATTGTGTACTCTTATTTATTTTCAATACATCTTCATTCAATTTCTATGCAAGAATCAAAATGCAGTATAAAAAATTGCATTCA
ATATCATGGTAAAAAAATTGTTCAAAAAAAGTAAATATCATGGTAAAAAAATCATTAGATTTTGCAATAAGTAAGAGTCAAGTTTTACCTTGTGAGGAAT
TCCTCCCAACAGAATCATGGGAGCTCTTTCTTCTTCTCTCATTGTGCCCTGCCAGTCTCC


dot-bracket secondary structure
......((..(((..((.(((((.((((((((((((((...((((..(((((...........((((((..............(((((((.....(((..
....))).((((.((((((((((((..(((((.......)))))..((((((((((....))...)))).))))..))))))))....))))..))))..
.......))))))).......((.((((((((((((...........................(((((((.((..((((((((.......))))))))..
.((((((((((........................))))))))))............)))))))))))))))))))))))))))))...(((.((((...
.)))).)))...))))))))).)))))))).)))))).))))).))..)))....))...



SIMILARITIES
miRBase zma-MIR156j: 0.00002

PMRD cpt-miR156b: 0.0000004

microPC miR157: 0.0004
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern

references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"




Liczniki na strone;