ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR169_2
source: miRBase, original name: mtr-MIR169e (MI0005579)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGCCAAGGATGACTTGCCG miRNA* GCAGGTCATCCTTCGGCTATAT mismatches: 1 bulges: 1 |
pre-miRNA
GAAATGGAGCCAAGGATGACTTGCCGGTATATTAGTTTGTCGCTAAAGCTAACTAGCTTTAGTTGTTGGGTACTCCCGGCAGGTCATCCTTCGGCTATAT
T
dot-bracket secondary structure
..((((.((((((((((((((((((((..((((........(((((((((....))))))))).....))))...)))))))))))))))).)))).)))
)
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
GAAATGGAGCCAAGGATGACTTGCCGGTATATTAGTTTGTCGCTAAAGCTAACTAGCTTTAGTTGTTGGGTACTCCCGGCAGGTCATCCTTCGGCTATAT
T
dot-bracket secondary structure
..((((.((((((((((((((((((((..((((........(((((((((....))))))))).....))))...)))))))))))))))).)))).)))
)
SIMILARITIES| miRBase mtr-MIR169m: 5e-52 PMRD phy-miR169: 0.000005 microPC miR169: 0.00002 | UniProt no hits RFAM MIR169_2: 2e-51 |
Identical with: mtr-MIR169m from miRBase (MNEST040690) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
