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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002226
species: Populus trichocarpa x Populus nigra
miRNA family: MIRf445
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCGATGCAGCATCATCAAGAT

miRNA*
CTTGATGATGCTCCACCCGCA

mismatches: 4
bulges: 0

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pre-miRNA
TCCTTTTGTGTTGTATAGTCGTTTATTGCCGATGCAGCATCATCAAGATTCTCACTTCCAAAGAACTTTGGCAGATGAACAGAAACAAAGAGAGATTTAA
CTCTAACATCTCCGGCCGTGCATTTGCATGTGAATCTTGATGATGCTCCACCCGCAAACAACGATTGTCAATATTTCCATG


dot-bracket secondary structure
.......((((((.(((((((((..((((...((.(((((((((((((((((((((.(((((....))))).)).)))..(((.......((((......
))))....))).....(((((....))))).)))))))))))))))).))...))))..))))))))))))))).......



SIMILARITIES
miRBase ptc-MIR172b: 5e-66

PMRD ptc-miRf10081-akr: 3e-70

microPC miR172: 0.000002
UniProt no hits

RFAM mir-172: 2e-65
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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