miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST046439
species: Ipomoea batatas
source: microPC, original name: miR530

Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCATTTACACCTGCACCT

miRNA*
 GTGCAGAAGTAACTGCA

mismatches: 4
bulges: 0
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pre-miRNA
 TGCATTTACACCTGCACCTGCACTTGCCTCAGCCCAGATCGAAAGCCTAGCTGCTGTGGTTGCGCCGCCGCATGATGGTGTATGTGCGGCCGGCCGGCCG
GAAAATGATGATGGGATGAGCTGAGGTAGGTAGTAGGTGCAGAAGTAACTGCA

dot-bracket secondary structure
.(((.((((..((((((((((((((((((((((.((..(((..(((......)))..(((((.((((((((((..........)))))).))))))))).
...........)))..)).)))))))))))).))))))))))..)))).))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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