ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR168
source: PMRD, original name: stu-miR168
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAC miRNA* CCCGCCTTGCATCAACTGA mismatches: 2 bulges: 0 |
pre-miRNA
TCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGGCAGCTTACCGGTAAAAACTTTTTTTTTTTACATGTCTGT
GGCGTAGTTTGGGTCCCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((((((.(((((((.(((((....(((((((((.((....)).)))).)))))(((((((.......))))))).))).)))
)))).))..))))))))).)))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGGCAGCTTACCGGTAAAAACTTTTTTTTTTTACATGTCTGT
GGCGTAGTTTGGGTCCCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.(((((((((.(((((((.(((((....(((((((((.((....)).)))).)))))(((((((.......))))))).))).)))
)))).))..))))))))).)))))))))).)))
SIMILARITIES| miRBase ptc-MIR168b: 0.0001 PMRD sly-miR168: 0.000006 microPC miR168: 7e-52 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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