miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil

ABOUT THIS RECORD

ID: MNEST054667
species: Solanum tuberosum
miRNA family: MIR171
source: PMRD, original name: stu-miR171

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGATTGAGCCGCGCCAATATC

miRNA*
TGACGAGGCACCATCA

mismatches: 5
bulges: 3

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pre-miRNA
TGATTGAGCCGCGCCAATATCATTTGCGCGTTTGAGAATTGTCCAGCCAGCAATAGTTCAGAGGCCTGAAAAATCTGGTCATAAATAAACTGTTGTTCCT
GCAATTGATGACGAGGCACCATCA

dot-bracket secondary structure
.(((.(.(((.((....(((((.((((..(((.((......)).))).((((((((((....((((.((....)).)))).......))))))))))...
)))).))))).)).))).).))).

UniProt no hits

RFAM MIR171_1: 0.0004

Identical with: stu-miR170 from PMRD (MNEST054666)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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