miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST007398
species: Solanum tuberosum
miRNA family: MIR403
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTAGATTCACGCACAAACTCG

miRNA*
 CGTTTGTGCGTGAATCTAACA

mismatches: 4
bulges: 0
View larger
pre-miRNA
 AGAAATGGAAAATCAGGAAGAGGCATATTTCACGTTTGTGCGTGAATCTAACAACCCTTTTCATCAGAAAAACTGTTGTTGTTTGCTAGATTCACGCACA
AACTCGTAATATGTATTTTTCGAATATCTGCGCTT

dot-bracket secondary structure
......(((......((((((.(((((((....((((((((((((((((((((((..(((((....)))))...))))).......))))))))))))))
)))....))))))).)))))).....)))......


SIMILARITIES
miRBase tcc-MIR403a: 0.0000004

PMRD stu-miR403: 2e-55

microPC miR403: 1e-35		UniProt no hits

RFAM MIR403: 0.0000005		most similar mature miRNAs

Identical with: stu-miR403 from PMRD (MNEST054669)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;