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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST007401
species: Solanum tuberosum
miRNA family: MIR390
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGCTCAGGAGGGATAGCACC

miRNA*
CGCTATCCATCTTGAGTTTTA

mismatches: 4
bulges: 0

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pre-miRNA
AATTGGTATAGAGAATCTATAAAGCTCAGGAGGGATAGCACCATGAATACATCTTAATAACTATCTATAGCGCTATCCATCTTGAGTTTTATGGCTTCTT
CATGCTCGC


dot-bracket secondary structure
....(((((.(((((.(((((((((((((((.(((((((................................))))))).))))))))))))))).)))))
.)))))...



SIMILARITIES
miRBase aly-MIR390b: 0.000000005

PMRD gma-miR390b: 0.00000002

microPC miR390: 7e-33
UniProt no hits

RFAM MIR390: 0.0000001
most similar mature miRNAs

Identical with: miR390 from microPC (MNEST045082)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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Liczniki na strone;