miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Persea americana, Aristolochia fimbriata, Liriodendron tulipifera, Saruma henryi



ABOUT THIS RECORD

ID: MNEST000004
species: Persea americana
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Persea americana Persea Lauraceae Laurales magnoliids Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCTTCATCATCATCATCA

miRNA*
 GTATGTGACGGTTGAGATGTAT

mismatches: 4
bulges: 1
View larger
pre-miRNA
 CAACCTTCACGCTCCAATGAGCTTCAGAAGTTCCACCATTATGGCATCAGTTTGCATAATATCATCTTCATCATCATCATCATCATCATCATTCATTTTT
ATCAGGTTATATTCATGAATAAGCAATGATGGTTTTATAGCCATTTATACAAGTACTGGTCAAAGGTATTCATTCTAATAGATATAACCCAATCAAAAGA
CAAGTGATAGACCCGACACAAAAATTCAATAATCAAGTGATCCCAAAAATTTTATAGCAAAGTACATAAAAGTTGATGATGACTGATGGGCTTTACAGTC
GAAGCCTGGTATATCCATTAATCAGGATTCTTCATGAGTCTAGTGGTAAGATTCGATGGTGATGGTATGGTATGTGACGGTTGAGATGTATAGTGACAGG
CATAACCGAAAGGGATCTTCGTGAGGCCAAGTTAGTAAGAGAATCAGAG

dot-bracket secondary structure
..........(((..(((..((((((((((.(((....((.(((.....((((((((.(((.((((((.(((.((((.(((((((((((((((...((((
((((..(((.(((((((((.((....((((((...((((.((..((((..........(((...(((..(((((((....(((........)))...)))
...))))...))).)))...........))))(((.((.(((.(((...((((((..........)))))).)))..))).))))).(((((((......
))))))))))))).)))))).......)).))))))))).)))))))))))...)))))))))))..))))..)))).))).))))))))).))).))))
)....))).)).))).)))).))))))...))))))..((...))....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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