miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000319
species: Brassica oleracea var. alboglabra
miRNA family: MIR1885
source: miRNEST

Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CATCAATGAAAGGTATGATTCC

miRNA*
AATCACACTTTCATTGATAAT

mismatches: 3
bulges: 1

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pre-miRNA
NAAAATCTTCTTCTGTATTTTCTTCTNNNGACTTCCTTCTTCTTTGTCNNNAACTGTCTCCATCCTGTCTTCACGAGCTTCCTCTAGAAGATGTGCGCAG
AGTCTTTCTAAGTCACACTCATAAAGAGTTCAAAGAAAAGGAATCACACTTTCATTGATAATGAAATCAATAGAGAATGCTACTGAGCTCCTACAGGCGA
TTAGAAAATCTAATATGGCGATAGTCTTGCTCTCTATGAAGTGTCTATGAGAACAAGATTATCGCGATCTTAGATCCTCTAATTGCTTGTAAGAGCTGAT
CACCAATGGATCATTCGCTATTGATCTCTTCATCAATGAAAGGTATGATTCCCTTTCTTTGAAATTCCTTTTGAATGTGACTGAGAAAGCTTCTATGTAC
ATCTTCTCCGCGGAAGCTCATGAAAACAAGGTAGAACCAATTGTGGACAAAGAAGGAAGACATGAAAAAGATAGAGAAGAAGATCAACTT


dot-bracket secondary structure
....((((((((((.((((((.(((......((((((((((...((((...((.((..((.(((.(((.((((.((((((((...((((((((((((.((
((.((((((.(((((((.(((.((.(((((((((((((.(((((((..(((((((((((...((.((((((((.((((((((.(((((((.(((((((((
(((((..((((((.((.((((((((((((.((((...((....))...)))).)))))))))))).)).))))))..)))))))))))))).)))))...
...)).)))..))))).)))))))).))...)))))))))))...))))))).)))))))).))))).)).))).))))))).)))))).)))).)))))
)))))))....)))))))).)))).))).))).))..)).))..).)))))))))))))....))).)))))).))))))))))......



SIMILARITIES
miRBase bra-MIR1885: 1e-68

PMRD bra-miR1885: 1e-68

microPC no hits
UniProt sp|O82500|Y4117_ARATH: 0.0000000000003

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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