miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST046480
species: Eucalyptus globulus
source: microPC, original name: miR399

Taxonomy by NCBI:
Eucalyptus globulus Eucalyptus Myrtaceae Myrtales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAGTTGCCCT

miRNA*
GGCTTCTCTACTTTGGCAAC

mismatches: 3
bulges: 0

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pre-miRNA
AGGGCTTCTCTACTTTGGCAACACATGTCAATGATGACGACGACGGAGAAGTCGAACGGATGCCGTCCAGTCATCGACGACTTGCCAAAGGAGAGTTGCC
CT


dot-bracket secondary structure
(((((..((((.(((((((((.....(((..(((((((...(((((....(((.....))).)))))..)))))))..)))))))))))).))))..)))
))



SIMILARITIES
miRBase vvi-MIR399b: 0.000001

PMRD vvi-miR399b: 0.000001

microPC miR399: 4e-53
UniProt no hits

RFAM mir-399: 0.00009

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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