miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000577
species: Eucalyptus gunnii
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Eucalyptus gunnii Eucalyptus Myrtaceae Myrtales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCCAAGAATGAATTGCCAA

miRNA*
 GGCAATTCATCCTTGGCTTCA

mismatches: 4
bulges: 0
View larger
pre-miRNA
 AGAGGCCAACGTAGCCAAGAATGAATTGCCAACAGAAATTGGAGACTTGAAAGGCGTTCGCATTGAATTCCTAAAGTCGCCGGCAATTCATCCTTGGCTT
CATTCTCCTT

dot-bracket secondary structure
.((((.......(((((((.((((((((((..........((.(((((...(((.((((.....)))).))).))))).)))))))))))).))))))).
......))))


SIMILARITIES
miRBase vvi-MIR169v: 0.000001

PMRD vvi-miR169v: 0.000001

microPC miR169: 9e-45		UniProt no hits

RFAM MIR169_2: 0.00002		most similar mature miRNAs

Identical with: miR169 from microPC (MNEST046375)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;