miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000581
species: Eucalyptus gunnii
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Eucalyptus gunnii Eucalyptus Myrtaceae Myrtales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GCTCTTCCTCTTCCTCTTCTT

miRNA*
GAAGAGGCTGGAGAGGCAA

mismatches: 3
bulges: 2

View larger
pre-miRNA
GTTCCTCCCCTGCTCTTCCTCTTCCTCTTCTTCAACTTCTTCATTGTCACCAGCCACATTTAATCCCCGCAAGAACCACTTGAGGAGCAACATCACTACC
TGCAAGGCATTGAGCGATCCGCCCATTGCACCAGCGAGCAGGAGAGGCCTTGCCATTTCTCTCGTGACCACTTCCTTCCTTTTCTCTTTGGGAGGGGGAG
AGAAATCGGGTGGTGCCAATGCAGCTATTCTTGAGGCTGATGATGATGTGGAGCTCCTGGAGAAGGTGAAGAAGGACAGGAAGAAGAGGCTGGAGAGGCA
A
GGGATCAT


dot-bracket secondary structure
.....((((.((((.((((....((((((((((..((((((((((.((.(((((((((((..(((.((.((((.....)))).))(((....(((.....
.((...((((((.((...((((((..((.....(((((.(((((.(((...))).))))))))))...)).(((.(((((((((((...)))))))))))
.)))...)))))).)))))))).))......))).))))))...))))))).....)))).)).)))))))))).....))))))))))..)))).))))
.
))))....



SIMILARITIES
miRBase mtr-MIR2673b: 0.001

PMRD no hits

microPC no hits
UniProt sp|O22773|TL16_ARATH: 0.00000008

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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