miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea

ABOUT THIS RECORD

ID: MNEST002709
species: Thellungiella halophila
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Thellungiella halophila Thellungiella Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGACAGAAGAGAGTGAGCACA

miRNA*
TGCTCACCTCTCTTTCTGTCAGT

mismatches: 1
bulges: 2

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pre-miRNA
AGAAATGCAAACAGAGAAAACTGACAGAAGAGAGTGAGCACATGCAGGCACTGTTATGTGTCCATTACTTTGCGTGTGCGTGCTCACCTCTCTTTCTGTC
AGTTGCCTGCCTCTCTCTTTC

dot-bracket secondary structure
........(((.(((((.(((((((((((((((((((((((.((((.(((..((.(((....))).))..))).)))).))))))).))))).)))))))
)))).......))))).))).

UniProt no hits

RFAM mir-156: 4e-35

most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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