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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Cucumis melo subsp. melo, Eucalyptus globulus, Eucalyptus gunnii, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Limnanthes alba, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Paullinia cupana var. sorbilis, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Trifolium pratense, Tropaeolum majus, Vitis shuttleworthii, Bruguiera gymnorhiza, Cajanus cajan, Carica papaya, Cicer arietinum, Citrus clementina, Glycine max, Arabidopsis thaliana, Vigna unguiculata, Vitis vinifera, Medicago truncatula, Brassica oleracea, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST040648
species: Medicago truncatula
miRNA family: MIR156
source: miRBase, original name: mtr-MIR156 (MI0001752)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGAGAGCACA

miRNA*
 AGCTCTTTCTTCTTCTCTCATT

mismatches: 4
bulges: 1
View larger
pre-miRNA
 AGCCATGAATCAGTCCGAGATGACAGAAGAGAGAGAGCACACCCACCTGATTACAAGTAACAAAAAACTACCAACTATCAACATTTTGTCTACTATGAAG
AAAATCACATGTCTAGACTATAGTTACGAATGGAAGATACATTCAATGATGTTTATGAAAATTTGAGACGGTCGAGGACTATAGTTACTCTATCGCATAC
ATTTAATGACAAAAAAAATTGTGTACTCTTATTTATTTTCAATACATCTTCATTCAATTTCTATGCAAGAATCAAAATGCAGTATAAAAAATTGCATTCA
ATATCATGGTAAAAAAATTGTTCAAAAAAAGTAAATATCATGGTAAAAAAATCATTAGATTTTGCAATAAGTAAGAGTCAAGTTTTACCTTGTGAGGAAT
TCCTCCCAACAGAATCATGGGAGCTCTTTCTTCTTCTCTCATTGTGCCCTGCCAGTCTCC

dot-bracket secondary structure
......((..(((..((.(((((.((((((((((((((...((((..(((((...........((((((..............(((((((.....(((..
....))).((((.((((((((((((..(((((.......)))))..((((((((((....))...)))).))))..))))))))....))))..))))..
.......))))))).......((.((((((((((((...........................(((((((.((..((((((((.......))))))))..
.((((((((((........................))))))))))............)))))))))))))))))))))))))))))...(((.((((...
.)))).)))...))))))))).)))))))).)))))).))))).))..)))....))...


SIMILARITIES
miRBase zma-MIR156j: 0.00002

PMRD cpt-miR156b: 0.0000004

microPC miR157: 0.0004		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern

references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"



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